The human body contains trillions of microbes and many of these microbes contain prophages. These prophages can provide genes to their hosts such as virulence, toxin production and antibiotic resistance that could impact human health. To gain an overview of what prophages are in the human microbiome and which ones are providing genes to their hosts that may be detrimental to human health we examined 19,006 sequences from Genbank to gain an approximation of the microbiome. We manually categorised the samples by what area of the human body they were sampled from and the health of the patient. From there we determined the number, length and position of all the prophages in the samples. The samples were also run through AMR finder+ and other programs to find which prophages are providing toxins, virulence, and AMR genes to what bacteria in what area of the human body. The results show that the prophage abundance varies significantly between different areas of the human body and humans with different illnesses.